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Table 1 Genomic regions with different LD levels partitioned by mean LD score

From: Impact of linkage disequilibrium heterogeneity along the genome on genomic prediction and heritability estimation

LD levels

High-density panel (300K SNPs)

Medium-density panel (50K SNPs)

Mean LD scorea

Replicate tagging level

Mean LD score

Replicate tagging level

Very high

186.9 (33.0)b

26.9 (15.7)c

27.1 (4.7)

2.5 (1.0)

High

136.3 (8.0)

21.2 (12.2)

19.7 (1.2)

2.5 (1.0)

Moderate

112.3 (6.1)

18.4 (10.6)

16.1 (0.9)

2.4 (1.0)

Low

91.3 (6.2)

16.3 (9.7)

13.0 (0.9)

2.4 (0.9)

Very low

62.8 (13.5)

14.0 (8.5)

8.7 (2.1)

2.3 (0.9)

  1. a:Mean LD score was used to represent regional LD
  2. bAverage mean LD score of SNPs at each LD level (standard deviation)
  3. cAverage replicate tagging of SNPs at each LD level (standard deviation)