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Table 1 Comparison of genomic features between whole genome assemblies of the Luchuan breed and other pigs

From: Integration of multi-omics data reveals cis-regulatory variants that are associated with phenotypic differentiation of eastern from western pigs

 

Luchuan

Duroc [105]a

Tibetan wild [51]

Wuzhishan [69]

Bama [68]

Sequenced genome size (Gb)

2.58

2.50

2.43

2.64

2.49

Contig N50 (Mb)

18.03

41.89

0.0207

0.0235

1.01

Scaffold N50 (Mb)

140.09

138.97

1.06

5.43

140.44

Percentage of anchoring and ordering

96.1%

97.34%

–

–

97.49%

Predicted PCG

22,710

22,452

21,806

20,326

21,334

Repeat proportion (%)

40.16

40.55

39.47

38.20

37.32

Complete BUSCOs (%)

95.1

96.0

93.1

95.2

93.9

  1. aStatistic of the Duroc pig genome was based on Sscrofa11.1 (Ensembl release-95)
  2. Percentage of anchoring and ordering: the percentage of assembled final assembly was assigned to the 20 pig pseudo-chromosomes (18 autosomes and X/Y chromosome)
  3. PCG: protein-coding genes
  4. The numbers in brackets represent references