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Fig. 1 | Genetics Selection Evolution

Fig. 1

From: The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle

Fig. 1

Comparison of the variants called between DeepVariant (DV) and GATK. a Intersection of variants called with each variant caller (or both) and the Ti:Tv ratio of the biallelic SNPs of each set. b Percentage of imputed genotypes called by each variant caller. c Intersection of variant calls with truth genotyping arrays, where only variants at intersecting positions are retained. Variants with a low, moderate and high predicted impact from the intersecting sets are indicated

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Genetics Selection Evolution

ISSN: 1297-9686