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Fig. 4 | Genetics Selection Evolution

Fig. 4

From: The size and composition of haplotype reference panels impact the accuracy of imputation from low-pass sequencing in cattle

Fig. 4

Genotyping accuracy from low-pass whole-genome sequencing. a F1 score between truth and imputed variants. b GLIMPSE INFO score achieved with different sequencing coverages and haplotype panels. c Differences (subtraction) between F1 and GLIMPSE INFO average scores for different sequencing coverages and haplotype panels. d Squared dosage correlation (r\(^{2}\)) between imputed data and truth set, stratified by MAF for lcWGS at 0.5x. Panels are indicated with colours and number/percentages of BSW samples are indicated with different shapes of points. Multibreed panels contain 150 samples. Points indicate the average of the results for all variants in three replicates

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Genetics Selection Evolution

ISSN: 1297-9686