Genetics Selection Evolution

Table 5 Accuracy of genomic selection

From: Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures

Generation		Unequal		Equal
	Model	Low	High	Low	High
1
	BM 1	0.47 (0.04)	0.37 (0.01)	0.31 (0.02)	0.35 (0.02)
	BM 5	0.48 (0.04)	0.32 (0.01)	0.31 (0.01)	0.33 (0.01)
	PLSR 1	0.40 (0.02)	0.38 (0.01)	0.39 (0.01)	0.37 (0.02)
	PLSR 5	0.37 (0.02)	0.35 (0.02)	0.35 (0.01)	0.35 (0.02)
	GBLUP 1	0.38 (0.01)	0.37 (0.01)	0.35 (0.01)	0.36 (0.01)
	GBLUP 5	0.35 (0.01)	0.35 (0.01)	0.32 (0.01)	0.35 (0.01)
	BLUP	0.23 (0.02)	0.24 (0.02)	0.22 (0.01)	0.22 (0.01)
10
	BM 1	0.08 (0.01)	0.12 (0.01)	0.15 (0.01)	0.14 (0.01)
	BM 5	0.05 (0.02)	0.13 (0.02)	0.11 (0.01)	0.13 (0.01)
	PLSR 1	0.08 (0.02)	0.11 (0.02)	0.15 (0.02)	0.15 (0.01)
	PLSR 5	0.09 (0.01)	0.11 (0.02)	0.13 (0.02)	0.12 (<0.01)
	GBLUP 1	0.08 (0.01)	0.14 (0.02)	0.14 (0.01)	0.14 (0.01)
	GBLUP 5	0.08 (0.01)	0.13 (0.01)	0.15 (0.02)	0.15 (0.01)
	BLUP	0.01 (0.02)	0.01 (0.03)	0.02 (0.03)	0.00 (0.03)

Accuracy (standard deviation), after one and ten generations of selection in genetic architectures with a low number of QTL of unequal variance (column 3), a high number of QTL of unequal variance (column 4), a low number of QTL of equal variance (column 5) and a high number of QTL of equal variance (column 6); selection was on breeding values estimated with a Bayesian method (BM), partial least square regression (PLSR), genomic BLUP (GBLUP) or pedigree BLUP (BLUP); numbers 1 and 5 behind estimation methods indicate the number of generations used in the training population

Back to article page

ISSN: 1297-9686

Contact us

Submission enquiries: helene.hayes@inrae.fr
General enquiries: info@biomedcentral.com