Imputation of non-genotyped individuals based on genotyped relatives: assessing the imputation accuracy of a real case scenario in dairy cattle

Table 5 Theoretically predicted imputation accuracy based on selection index theory

	Number of genotyped offspring
	0	1	2	4
Both parents	0.71	0.76	0.79	0.84
SireMGS/DamPGS	0.56	0.66	0.73	0.80
Sire/Dam	0.50	0.63	0.71	0.79

Predicted for situations with both parents genotyped, one parent and one grandparent genotyped (SireMGS/DamPGS), or one parent genotyped (Sire/Dam) and with different numbers of genotyped offspring.

ISSN: 1297-9686