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Table 1 Significant SNPs for stillbirth and associated genes

From: Revealing new candidate genes for reproductive traits in pigs: combining Bayesian GWAS and functional pathways

SNP

Chr

Position (bp)

QTL

Gene

Distance (bp)a

BGIS0003207

1

183,948,686

–

FEM1B

14,336

 

PIAS1

Inside

 

ITGA11

6384

MARC0007670

1

193,689,396

–

–

–

M1GA0001259

1

204,647,860

QTL 1

SAMD4A

6863

ALGA0007251

1

204,871,282

LOC102168145, WDHD1, SOCS4, MAPK1IP1L, LGALS3 and DLGAP5

Inside

MARC0056056

1

204,934,912

H3GA0003422

1

205,020,361

ASGA0010665

2

87,274,373

–

F2R

5412

LOC102165085/IQGAP2-like

30,878

ALGA0014165

2

87,624,560

–

LOC100520366

Inside

MARC0000488

2

87,728,463

–

–

–

ALGA0014249

2

88,859,718

–

–

–

ALGA0018674

3

47,957,752

–

NPHP1

Inside

LOC102166895

9013

ASGA0028841

6

82,315,974

–

PTP4A2

19,505

ASGA0070042

15

90,388,740

–

–

–

ALGA0086491

15

111,088,143

–

LOC100738946/HECW2

Inside

ASGA0070213

15

111,116,466

–

LOC100738946/HECW2

Inside

ASGA0072736

16

26,077,922

–

–

–

H3GA0049633

17

61,860,123

–

CYP24A1

31,229

ASGA0077857

17

61,889,054

–

CYP24A1

2298

  1. The table shows significant SNPs, their positions in base pairs (bp) on the swine chromosome (Chr), the QTL region, associated genes (genes located in a QTL region or in an interval of 32.5 Kbp around each QTL region or SNP), followed by their distance in base pairs of a single marker or in relation to the first or last SNP of the region
  2. aGene location in relation to the QTL region or to the single SNP
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Genetics Selection Evolution

ISSN: 1297-9686