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Fig. 6 | Genetics Selection Evolution

Fig. 6

From: Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population

Fig. 6

Imputation accuracy and its relation with the connectivity between each imputed animal and the reference set. Average numbers of Mendelian inconsistencies (AVTOP10_5K and AVTOP10_50K) between each animal in the imputed set and all animals from the reference set were calculated and are presented for each imputed animal as the average of 10 pairs of animals (one from the reference set and one from the imputed set) with the lowest Mendelian inconsistency. Imputation from 5K to 50K (Scenario 1_5K50K) and 5K to HD (Scenario 1B_5KHD_1STEP) using the FIMPUTE software for purebred Romney animals is also compared with the value defined above. a AVTOP10_5K calculated using the 5K panel before imputation. b AVTOP10_50K calculated using the 50K panel. The x-axis represents the average number of Mendelian inconsistencies and the y-axis the imputation accuracy per animal measured by concordance rate (CR)

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Genetics Selection Evolution

ISSN: 1297-9686