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Table 7 Rare allele imputation accuracy (r2) for different ranges of MAF

From: Assessing accuracy of imputation using different SNP panel densities in a multi-breed sheep population

MAF

Number of SNPs

r2a

0 < MAF = 0.0001

35

0

0.0001 < MAF = 0.001

96

6.6

0.001 < MAF = 0.01

625

38.9

0.01 < MAF = 0.05

2360

57.8

  1. aAllelic imputation accuracy (r2) for Scenario 27_5K50K where 1000 Romney animals were imputed using a within-breed reference set that included 4256 animals
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Genetics Selection Evolution

ISSN: 1297-9686