Table 2 Number of variants in each of the subsets of variants selected using COJO, and number of variants in linkage disequilibrium (LD) with the selected variants, which were ignored in the GRMc
Trait | Selection criteria | Number of variants in subset of selected variants | Number of variants in LD with selected variants |
|---|---|---|---|
PY | COJO3 | 90 | 1,650,152 |
COJO5 | 64 | 1,154,416 | |
COJO5LD | 35 | 615,586 | |
COJO#100 | 100 | 1,688,270 | |
SCS | COJO3 | 195 | 3,241,932 |
COJO5 | 215 | 3,449,212 | |
COJO5LD | 42 | 757,095 | |
COJO#100 | 100 | 1,652,678 | |
IFL | COJO3 | 264 | 3,835,730 |
COJO5 | 209 | 3,151,538 | |
COJO5LD | 35 | 607,631 | |
COJO#100 | 100 | 1,675,727 |