Table 5 Number of iterations in PCG of linearly equivalent ssGBLUP MME using marker matrix \({\mathbf{Z}}_m^{vR1}\) (VanRaden 1), convergence tolerance \(10^{-12}\), heritability 0.1, and diagonal preconditioning under different polygenic proportions w
From: Single-step SNP-BLUP with on-the-fly imputed genotypes and residual polygenic effects
MME | Size | Weight \({w}\) | |||||
|---|---|---|---|---|---|---|---|
0.00 | 0.01 | 0.10 | 0.20 | 0.30 | 1.00 | ||
Orig. | 73,580 | – | 178 | 131 | 126 | 122 | 119 |
1 | 73,580 | – | 191 | 156 | 148 | 145 | 139 |
2 | 111,106 | 438 | 491 | 459 | 429 | 398 | 139 |
3 | 181,800 | 438 | 1732 | 1592 | 1416 | 1247 | 119 |
4 | 181,800 | 107 | 105 | 130 | 151 | 160 | 82 |
5 | 181,800 | 107 | 107 | 132 | 151 | 162 | 49 |
6 | 115,054 | 107 | 105 | 130 | 151 | 160 | 82 |