A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels

Table 2 Size distribution of the WGS segments^a encompassed by the scaffold (GEN-P2) (number of SNPs, physical length)

	GEN-P2 scaffold
Number of WGS SNPs per segment	Minimum	1
	Average	146.97
	Median	110
	Maximum	2241
Singleton segments^b	Number	145
Singleton segments^b	Scaffold proportion (%)	0.41
Physical length of segments in bp	Minimum	1
	Average	67,834.76
	Median	53,507
	Maximum	1,703,836
Physical length of non-singleton segments in bp^b	Minimum	39
	Average	68,114.66
	Median	53,715

^aWGS segments being defined as all consecutive WGS SNPs of the trusted set of SNPs for which the closest genotyped SNP is the same
^b“Singleton segments” refers to segments that contain only one SNP from the scaffold, therefore a scaffold SNP encompassing only itself in the WGS data

ISSN: 1297-9686