Table 4 Prediction bias (standard error) of SNP and haplotype models for BayesA, BayesB and BayesN analyses
Traita | Breedb | BayesA | BayesB (π = 0.5) | BayesN (Π = 0.5; π = 0) | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
SNP | Hap125c | Hap250d | SNP | Hap125c | Hap250d | SNP | Hap125c | Hap250d | ||
Fat | HF | 0.05 (0.05) | 0.07 (0.05) | 0.06 (0.05) | 0.06 (0.05) | 0.08 (0.05) | 0.07 (0.05) | 0.09 (0.05) | 0.06 (0.05) | 0.05 (0.05) |
J | −0.16 (0.04) | −0.16 (0.04) | −0.17 (0.04) | −0.15* (0.04) | −0.16 (0.04) | −0.16 (0.04) | −0.13* (0.04) | −0.18* (0.04) | −0.18 (0.04) | |
KX | 0.00 (0.04) | 0.00 (0.04) | 0.03 (0.04) | 0.01 (0.04) | 0.01 (0.04) | 0.03 (0.04) | 0.03 (0.04) | −0.01 (0.04) | 0.01 (0.04) | |
Lwt | HF | −0.04 (0.06) | −0.03 (0.06) | −0.01 (0.06) | −0.03 (0.06) | −0.03 (0.06) | −0.01 (0.06) | 0.00 (0.06) | −0.05 (0.06) | −0.03 (0.06) |
J | −0.21 (0.05) | −0.21 (0.04) | −0.18* (0.05) | −0.20* (0.05) | −0.20 (0.04) | −0.19 (0.05) | −0.15* (0.05) | −0.21 (0.04) | −0.21 (0.04) | |
KX | 0.00 (0.04) | −0.01 (0.04) | 0.02 (0.04) | 0.01 (0.04) | 0.00 (0.04) | 0.03 (0.04) | 0.06 (0.04) | −0.02 (0.04) | 0.01 (0.04) | |
SCS | HF | −0.05 (0.08) | −0.04 (0.08) | −0.04 (0.08) | −0.05 (0.08) | −0.04 (0.08) | −0.05 (0.08) | −0.04 (0.08) | −0.08 (0.08) | −0.08 (0.08) |
J | −0.23 (0.07) | −0.22 (0.07) | −0.18* (0.07) | −0.23 (0.07) | −0.22 (0.07) | −0.18* (0.07) | −0.22 (0.07) | −0.26* (0.07) | −0.21 (0.07) | |
KX | −0.18 (0.07) | −0.20 (0.07) | −0.17 (0.07) | −0.18 (0.07) | −0.20 (0.07) | −0.17 (0.07) | −0.18 (0.07) | −0.23* (0.06) | −0.20 (0.06) | |