From: Genome-wide SNP data unveils the globalization of domesticated pigs
Region | Chr | Position | Fst | Rank | Location | Genes | Notes |
---|---|---|---|---|---|---|---|
Asia | 15 | 105803885 | 0.90 | 1 | Intergenic | MSTN | Muscle growth/differentiation [33] |
14 | 51279090 | 0.81 | 2 | Intergenic | PATZ1 | Spermatogenesis [41] | |
5 | 23737420 | 0.80 | 6 | In gene | LEP | Growth, energy homeostasis [35] | |
4 | 90358483 | 0.80 | 7 | In exon | TBX19 | Personality traits angry/hostility [37] | |
6 | 45563650 | 0.78 | 8 | Intergenic | PAFAH1B3 | Development of brain [38] | |
6 | 45609490 | 0.76 | 11 | In gene | GSK3A | Insulin signaling pathways [36] | |
8 | 58493225 | 0.75 | 14 | Intergenic | NMU | Food intake and energy balance [34] | |
8 | 69912174 | 0.72 | 20 | In exon | GNRHR | Pubertal delay [39] | |
1 | 16779942 | 0.70 | 27 | In gene | ESR1 | Precocious puberty [40] | |
2 | 12631241 | 0.70 | 29 | In gene | Olfr466 | Perception of smell [42] | |
Europe | 18 | 21362149 | 0.74 | 1 | Intergenic | LRRC4 | Central nervous system [48] |
13 | 105334978 | 0.74 | 2 | In gene | VEPH1 | Central nervous system [49] | |
13 | 94430998 | 0.71 | 3 | In gene | PLSCR4 | Reproduction [52] | |
18 | 42219500 | 0.69 | 5 | Intergenic | TBX20 | Cardiac LDL-cholesterol [44] | |
4 | 46284264 | 0.69 | 6 | Intergenic | TMEM67 | Protein catabolic process [45] | |
7 | 67285122 | 0.68 | 7 | Intergenic | FOXA1 | Glucose homeostasis [46] | |
10 | 12907670 | 0.65 | 15 | In gene | SOX2-OT | Vertebrate development [43] | |
16 | 15192108 | 0.65 | 16 | Intergenic | CDH9 | Autism spectrum disorder [50] | |
6 | 53526888 | 0.64 | 18 | Intergenic | LAIR1 | Immune response [51] | |
15 | 27308675 | 0.64 | 19 | Intergenic | INSIG2 | Cholesterol synthesis [47] |