Table 2 Summary of the regions of putative signatures of selection detected by hapFLK analysis
From: A genome-wide scan to identify signatures of selection in two Iranian indigenous chicken ecotypes
Chr | Position (Mb) | Number of significant SNPs | Peak P-value | Peak Q-value | Number of genes |
|---|---|---|---|---|---|
1 | 434,470–434,352 | 5 | 4.27 × 10–6 | 8.11 × 10–3 | – |
1 | 15,481,982–15,485,698 | 59 | 8.56 × 10–8 | 9.62 × 10–4 | 2 |
1 | 195,604,292–195,605,428 | 19 | 2.52 × 10–6 | 6.11 × 10–3 | 3 |
2 | 320,222–905,567 | 318 | 7.26 × 10–9 | 2.5 × 10–4 | 19 |
2 | 19,149,170–19,168,337 | 9 | 4.90 × 10–6 | 8.74 × 10–3 | 1 |
3 | 4,315,154–4,316,471 | 28 | 2.40 × 10–6 | 5.89 × 10–3 | 1 |
4 | 592,005–1,129,104 | 33 | 1.36 × 10–6 | 4.73 × 10–3 | 2 |
4 | 1,793,886–2,540,113 | 162 | 7.05 × 10–7 | 2.98 × 10–3 | 6 |
4 | 11,848,194–11,848,517 | 11 | 3.72 × 10–6 | 7.53 × 10–3 | 1 |
4 | 63,734,725–63,735,252 | 10 | 3.03 × 10–6 | 6.72 × 10–3 | 1 |
5 | 352,470–658,990 | 128 | 1.56 × 10–7 | 1/39 × 10–3 | 11 |
5 | 17,260,400–17,270,064 | 72 | 5.24 × 10–7 | 2.57 × 10–3 | 5 |
5 | 36,923,176–57,911,202 | 58 | 2.02 × 10–6 | 5.32 × 10–3 | 2 |
6 | 23,492,639–24,056,037 | 45 | 1.49 × 10–7 | 1.36 × 10–3 | 3 |
7 | 22,056,870–22,351,378 | 471 | 9.51 × 10–14 | 2.84 × 10–7 | 15 |
8 | 4,089,299–4,679,692 | 91 | 2.07 × 10–8 | 4.27 × 10–4 | 16 |
8 | 20,142,893–25,633,392 | 73 | 6.23 × 10–7 | 2.80 × 10–3 | 4 |
9 | 5,048,355–5,294,874 | 36 | 2.14 × 10–7 | 5.52 × 10–3 | 3 |
9 | 15,117,357–15,127,879 | 48 | 4.01 × 10–7 | 2.26 × 10–3 | 2 |
10 | 3,181,235–3,276,403 | 55 | 5.29 × 10–7 | 2.57 × 10–3 | 1 |
10 | 20,424,930–20,531,639 | 105 | 1.72 × 10–7 | 1.48 × 10–3 | 10 |
11 | 543,196–552,444 | 76 | 3.91 × 10–7 | 2.24 × 10–3 | 4 |
11 | 17,670,561–18,929,198 | 393 | 5.41 × 10–8 | 6.79 × 10–4 | 23 |
12 | 1,844,142–3,584,210 | 297 | 4.13 × 10–8 | 5.99 × 10–4 | 21 |
13 | 1,681,154–1,716,546 | 56 | 3.46 × 10–7 | 2.13 × 10–3 | 2 |
13 | 9,215,174–9,262,342 | 61 | 8.65 × 10–7 | 3.29 × 10–3 | 4 |
14 | 4,527,908–4,542,487 | 148 | 1.03 × 10–7 | 1.01 × 10–3 | 2 |
14 | 13,457,733–13,466,285 | 36 | 1.14 × 10–6 | 3.83 × 10–3 | 4 |
16 | 503,770–637,134 | 55 | 2.77 × 10–7 | 1.91 × 10–3 | 5 |
16 | 2,405,643–2,750,127 | 1333 | 4.31 × 10–10 | 6.35 × 10–5 | 38 |
17 | 5,162,885–6,250,543 | 8 | 2.16 × 10–6 | 5.56 × 10–3 | 5 |
18 | 9,029,424–9,781,214 | 357 | 8.04 × 10–8 | 9.20 × 10–4 | 21 |
19 | 6,101,292–6,102,285 | 19 | 1.50 × 10–6 | 4.52 × 10–3 | 1 |
20 | 9,895,217–9,899,561 | 16 | 3.11 × 10–6 | 6.83 × 10–3 | 3 |
20 | 10,004,382–10,590,764 | 100 | 2.78 × 10–9 | 1.64 × 10–4 | 5 |
22 | 1,480,237–1,486,672 | 20 | 3.37 × 10–6 | 7.14 × 10–3 | 1 |
22 | 3,734,510–3,835,387 | 116 | 8.65 × 10–7 | 3.29 × 10–3 | 8 |
22 | 5,266,531–5,268,855 | 21 | 2.89 × 10–6 | 6.56 × 10–3 | 3 |
23 | 2,341,704–2,342,263 | 18 | 3.01 × 10–6 | 6.71 × 10–3 | 1 |
23 | 6,082,331–6,085,084 | 25 | 7.15 × 10–3 | 3.00 × 10–3 | 2 |
25 | 258,310–296,757 | 77 | 1.44 × 10–7 | 1.33 × 10–3 | 6 |
25 | 1,537,552–1,537,977 | 18 | 1.61 × 10–6 | 4.70 × 10–3 | 1 |
25 | 2,210,263–3,017,751 | 531 | 3.38 × 10–8 | 5.72 × 10–4 | 24 |
25 | 3,699,556–3,707,549 | 51 | 5.03 × 10–7 | 2.52 × 10–3 | 3 |
26 | 1,166,789–1,182,684 | 56 | 5.17 × 10–7 | 2.55 × 10–3 | 1 |
27 | 5,189,796–5,371,260 | 43 | 2.47 × 10–6 | 6.36 × 10–3 | 2 |
27 | 6,481,778–7,699,113 | 871 | 2.31 × 10–11 | 8.41 × 10–6 | 36 |
28 | 2,456,294–3,326,745 | 99 | 4.13 × 10–7 | 2.30 × 10–3 | 8 |