Table 2 QTL detected in the meta-analysis for MUN
From: GWAS and genomic prediction of milk urea nitrogen in Australian and New Zealand dairy cattle
Chr | Pos (bp) | pmeta | pAUS | pNZL | Annotation | Genes | Start (bp) | End (bp) | N |
|---|---|---|---|---|---|---|---|---|---|
1 | 148,821,034 | 8.2 × 10–10 | 2.1 × 10–5 | 8.7 × 10–6 | Intergenic | CLDN14-RF00001 | 148,009,827 | 149,831,239 | 62 |
6 | 77,564,636 | 8.7 × 10–7 | 1.1 × 10–3 | 2.0 × 10–4 | Intron | ADGRL3 | 77,558,465 | 77,564,636 | 2 |
6 | 81,099,934 | 9.3 × 10–10 | 5.0 × 10–6 | 4.5 × 10–5 | Intron | EPHA5 | 81,099,934 | 84,329,940 | 35 |
6 | 85,635,311 | 1.9 × 10–11 | 5.8 × 10–7 | 7.3 × 10–6 | Intergenic | ODAM-CSN3 | 85,389,494 | 86,548,307 | 225 |
11 | 103,271,858 | 1.7 × 10–20 | 5.4 × 10–16 | 8.8 × 10–7 | Synonymous | GLT6D1 | 100,851,568 | 104,180,090 | 720 |
11 | 105,520,434 | 9.6 × 10–7 | 3.8 × 10–4 | 7.4 × 10–4 | Intergenic | ENSBTAG00000054425-OLFM1 | 105,520,433 | 105,520,434 | 2 |
14 | 525,863 | 6.6 × 10–11 | 9.3 × 10–19 | 9.3 × 10–1 | Downstream | ENSBTAG00000053637 | 520,394 | 633,066 | 102 |
19 | 47,763,063 | 9.5 × 10–7 | 6.5 × 10–4 | 4.2 × 10–4 | Downstream | TANC2 | 47,763,063 | 47,763,063 | 1 |
22 | 47,184,592 | 5.8 × 10–8 | 5.8 × 10–8 | – | Intron | CACNA1D | 47,163,588 | 47,286,336 | 36 |
26 | 21,278,969 | 3.6 × 10–7 | 1.4 × 10–4 | 7.0 × 10–4 | 3ʹUTR | SCD | 21,277,195 | 21,284,652 | 10 |
X | 16,376,624 | 2.2 × 10–7 | 7.2 × 10–7 | 2.2 × 10–2 | Intergenic | MBNL3-HS6ST2 | 16,366,703 | 16,376,624 | 6 |
X | 31,227,651 | 6.4 × 10–7 | 1.3 × 10–3 | 1.2 × 10–4 | Intron | AFF2 | 31,175,135 | 31,227,651 | 12 |
X | 54,324,305 | 7.2 × 10–7 | 1.6 × 10–4 | 1.3 × 10–3 | Intergenic | ENSBTAG00000009457-ENSBTAG00000045756 | 54,324,305 | 54,324,305 | 1 |
X | 106,058,470 | 5.7 × 10–9 | 2.9 × 10–6 | 4.3 × 10–4 | Upstream | PRRG1 | 105,580,018 | 108,413,114 | 30 |