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Table 4 Average milk Fourier transform infrared (FTIR) prediction performance (± SD) considering the systematic effect of days in milk, parity, and genomic information (Model M4) for the batch-out cross-validation scenario of blood metabolites parameters using BayesB and gradient boosting machine (GBM) methods

From: Integrating on-farm and genomic information improves the predictive ability of milk infrared prediction of blood indicators of metabolic disorders in dairy cows

Trait

Method

BayesB

GBM

R2

RMSE

Slope

R2

RMSE

Slope

Energy-related metabolites

 Glucose, mmol/L

0.74 ± 0.054

0.17 ± 0.012

1.04 ± 0.073

0.79 ± 0.051

0.16 ± 0.015

0.99 ± 0.060

 BHBA, mmol/L

0.53 ± 0.068

0.12 ± 0.034

1.05 ± 0.117

0.58 ± 0.066

0.11 ± 0.004

0.98 ± 0.078

 Urea, mmol/L

0.64 ± 0.050

0.54 ± 0.082

0.96 ± 0.093

0.74 ± 0.055

0.49 ± 0.048

1.01 ± 0.075

Liver function/hepatic damage

 AST, U/L

0.51 ± 0.093

15.34 ± 1.415

1.04 ± 0.136

0.61 ± 0.053

14.31 ± 0.828

1.01 ± 0.087

 GGT, U/L

0.53 ± 0.034

5.06 ± 0.341

1.05 ± 0.056

0.60 ± 0.043

4.95 ± 0.259

1.02 ± 0.090

 PON, U/mL

0.59 ± 0.045

12.46 ± 1.149

0.97 ± 0.095

0.64 ± 0.049

12.13 ± 0.658

1.01 ± 0.083

Oxidative stress metabolites

 ROMt, mgH2O2/100 mL

0.74 ± 0.040

1.58 ± 0.149

1.03 ± 0.050

0.77 ± 0.022

1.41 ± 0.152

0.99 ± 0.065

 AOPP, µmol/L

0.54 ± 0.042

5.68 ± 0.423

1.07 ± 0.073

0.63 ± 0.072

5.5 ± 0.449

1.02 ± 0.074

 FRAP, µmol/L

0.41 ± 0.084

23.58 ± 3.552

1.09 ± 0.077

0.48 ± 0.065

21.5 ± 1.572

1.01 ± 0.076

Inflammation/innate immunity

 Ceruloplasmin, µmol/L

0.68 ± 0.066

0.33 ± 0.033

0.95 ± 0.124

0.74 ± 0.056

0.31 ± 0.025

0.99 ± 0.069

 PROTt, g/L

0.77 ± 0.027

2.09 ± 0.172

0.96 ± 0.042

0.85 ± 0.040

1.87 ± 0.183

1.01 ± 0.045

 Globulins, g/L

0.82 ± 0.035

2.23 ± 0.230

1.07 ± 0.037

0.88 ± 0.025

1.96 ± 0.150

1.03 ± 0.029

Minerals

 Calcium, mmol/L

0.53 ± 0.030

0.07 ± 0.006

0.94 ± 0.099

0.62 ± 0.096

0.06 ± 0.023

1.01 ± 0.046

 Potassium, mmol/L

0.58 ± 0.069

0.23 ± 0.015

1.05 ± 0.093

0.67 ± 0.078

0.22 ± 0.014

1.01 ± 0.078

 Zinc, µmol/L

0.57 ± 0.054

1.63 ± 0.341

1.06 ± 0.085

0.67 ± 0.071

1.46 ± 0.244

1.03 ± 0.067

  1. BHBA: β-hydroxybutyric acid; AST: aspartate aminotransferase; GGT: γ-glutamyl transferase; PON: paraoxonase; ROMt: total reactive oxygen metabolites; AOPP: advanced oxidation protein products; FRAP: ferric reducing antioxidant power; PROTt: total proteins; RMSE: root mean squared error
  2. R2: coefficient of determination between the observed and predicted phenotypes in validation set and standard deviation (SD) as the variability measurement of predictive ability