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Table 5 Average milk Fourier transform infrared (FTIR) prediction performance (± SD) considering the systematic effect of days in milk, parity, and genomic information (Model M4) for the herd-out cross-validation scenario of blood metabolites parameters using BayesB and gradient boosting machine (GBM) methods

From: Integrating on-farm and genomic information improves the predictive ability of milk infrared prediction of blood indicators of metabolic disorders in dairy cows

Trait

Method

BayesB

GBM

R2

RMSE

Slope

R2

RMSE

Slope

Energy-related metabolites

 Glucose, mmol/L

0.63 ± 0.066

0.26 ± 0.034

1.07 ± 0.040

0.65 ± 0.035

0.16 ± 0.008

1.02 ± 0.073

 BHBA, mmol/L

0.40 ± 0.105

0.21 ± 0.033

0.94 ± 0.068

0.43 ± 0.062

0.12 ± 0.009

0.97 ± 0.057

 Urea, mmol/L

0.47 ± 0.164

0.78 ± 0.119

0.97 ± 0.084

0.49 ± 0.051

0.52 ± 0.041

1.01 ± 0.093

Liver function/hepatic damage

 AST, U/L

0.38 ± 0.115

17.14 ± 2.069

0.97 ± 0.072

0.43 ± 0.085

13.53 ± 1.268

1.05 ± 0.060

 GGT, U/L

0.45 ± 0.080

5.38 ± 0.341

0.98 ± 0.051

0.48 ± 0.063

4.12 ± 0.511

1.03 ± 0.046

 PON, U/mL

0.48 ± 0.035

17.21 ± 0.127

0.99 ± 0.091

0.52 ± 0.081

12.59 ± 1.577

1.02 ± 0.062

Oxidative stress metabolites

 ROMt, mgH2O2/100 mL

0.66 ± 0.071

1.89 ± 0.133

0.97 ± 0.089

0.69 ± 0.079

1.51 ± 0.326

1.01 ± 0.056

 AOPP, µmol/L

0.37 ± 0.057

8.86 ± 0.770

0.98 ± 0.076

0.41 ± 0.052

5.36 ± 0.440

1.01 ± 0.073

 FRAP, µmol/L

0.25 ± 0.061

36.86 ± 1.664

0.94 ± 0.082

0.29 ± 0.093

25.85 ± 2.601

1.01 ± 0.097

Inflammation/innate immunity

 Ceruloplasmin, µmol/L

0.58 ± 0.052

0.44 ± 0.004

0.96 ± 0.058

0.62 ± 0.066

0.32 ± 0.050

1.01 ± 0.065

 PROTt, g/L

0.76 ± 0.02

2.57 ± 0.255

0.97 ± 0.021

0.79 ± 0.039

1.91 ± 0.189

0.98 ± 0.050

 Globulins, g/L

0.77 ± 0.011

2.6 ± 0.312

0.96 ± 0.047

0.80 ± 0.019

1.82 ± 0.186

0.97 ± 0.037

Minerals

 Calcium, mmol/L

0.42 ± 0.086

0.17 ± 0.004

1.01 ± 0.093

0.47 ± 0.073

0.07 ± 0.007

0.98 ± 0.099

 Potassium, mmol/L

0.54 ± 0.065

0.32 ± 0.014

0.98 ± 0.094

0.57 ± 0.055

0.24 ± 0.014

1.04 ± 0.093

 Zinc, µmol/L

0.47 ± 0.083

2.27 ± 0.056

1.05 ± 0.099

0.50 ± 0.042

1.54 ± 0.054

1.02 ± 0.095

  1. BHBA: β-hydroxybutyric acid; AST: aspartate aminotransferase; GGT: γ-glutamyl transferase; PON: paraoxonase; ROMt: total reactive oxygen metabolites; AOPP: advanced oxidation protein products; FRAP: ferric reducing antioxidant power; PROTt: total proteins, RMSE: root mean squared error
  2. R2: coefficient of determination between the observed and predicted phenotypes in validation set and standard deviation (SD) as the variability measurement of predictive ability