Fig. 1

Predictive accuracy for each model and prior combination considered. Predictive accuracy, defined as correlation between predicted and observed phenotypes for each model, averaged over the three partitions. Models are classified by data used: SNPs only (Model X, Eqs. (1b) and (2b)), ASV only (Model B, Eqs. (1c) and (2c)), both SNPs and ASV (Model XB, Eqs. (1a) and (2a)). Each dot corresponds to the prediction accuracy obtained with a different combination of statistical method and prior, averaged over the three partitions