From: Genetic dissection of 26 meat cut, meat quality and carcass traits in four pig populations
Traits | TOP | Chr | Pos (bp) | p value | Nearest gene | Dis (bp) | Candidate gene |
---|---|---|---|---|---|---|---|
BBS | rs1501030 | 15 | 44,344,760 | 1.72E−05 | TENM3 | Within |  |
BPS | rs0702610 | 7 | 97,615,897 | 9.33E−06 | VRTN | Within |  |
AB | rs0700767 | 7 | 30,100,555 | 1.37E−08 | GRM4 | 78,750 | HMGA1, NUDT3, GRM4 |
AB | rs0501169 | 5 | 66,142,277 | 2.19E−06 | CCND2 | 27,706 |  |
AB | rs1705053 | 17 | 15,896,846 | 2.25E−05 | BMP2 | 135,651 | HAO1, BMP2 |
SB | rs1501163 | 15 | 50,915,343 | 5.05E−06 | UNC5D | 112,675 |  |
SC | rs0702610 | 7 | 97,615,897 | 2.76E−06 | VRTN | Within |  |
SC | rs0702516 | 7 | 121,223,217 | 2.01E−05 | WARS1 | Within | DLK1 |
SC | rs0201138 | 2 | 60,064,913 | 1.19E−05 | MAP1S | 35,048 |  |
LO | rs0501038 | 5 | 57,616,938 | 9.18E−06 | ERP27 | Within |  |
BE | rs1806217 | 18 | 10,455,423 | 1.20E−05 | UBN2 | 4168 |  |
BE | rs0200123 | 2 | 6,851,449 | 2.45E−05 | SLC25A45 | 168 |  |
RI | rs0702610 | 7 | 97,615,897 | 4.18E−16 | VRTN | Within |  VRTN |
CB | rs0702038 | 7 | 97,618,073 | 6.94E−08 | VRTN | Within |  VRTN |
CB | rs1402627 | 14 | 125,929,866 | 2.77E−06 | ATRNL1 | Within |  |
CB | rs1500252 | 15 | 9,945,936 | 1.24E−05 | LRP1B | Within |  |
CB | rs1705053 | 17 | 15,896,846 | 1.53E−05 | BMP2 | 135,651 |  BMP2 |
BF | rs1100173 | 11 | 9,429,262 | 8.14E−06 | KL | Within |  |
MC | rs0702610 | 7 | 97,615,897 | 4.47E−13 | VRTN | Within |  |
BL | rs1704784 | 17 | 2,382,922 | 7.70E−06 | SGCZ | Within |  |
TL | rs1303072 | 13 | 148,117,239 | 1.08E−05 | CD96 | Within |  |
TL | rs0602330 | 6 | 123,281,566 | 2.04E−05 | - | - |  |
LB | rs1705079 | 17 | 16,788,523 | 2.67E−14 | HAO1 | Within | BMP2, BMP2 |
LB | rs0501167 | 5 | 66,103,958 | 5.84E−08 | CCND2 | Within |  |
LB | rs0700777 | 7 | 30,235,367 | 3.80E−06 | GRM4 | Within | HMGA1, NUDT3, GRM4 |
LB | rs1300094 | 13 | 3,477,035 | 1.02E−05 | RFTN1 | Within |  |
LC | rs1603764 | 16 | 32,867,067 | 1.58E−05 | NDUFS4 | 7383 |  |
LC | rs1806864 | 18 | 42,102,045 | 2.00E−05 | MINDY4 | Within |  |