Table 3 Overlap of GWAS results across tibia traits, with their positions, estimated marker effects and p-values

1

107,054,728

A

Tibia strength, Tibia density^c

0.42, 0.40

2.7E−05, 3.7E−05

1

109,647,034

A

Medullary mineral %, Medullary phosphates/OM^c

0.22, 0.24

8.0E−05, 2.3E−05

1

109,663,826

A

Medullary mineral %, Medullary phosphates/OM^c

0.22, 0.24

8.0E−05, 2.3E−05

1

109,711,929

A

Medullary mineral %, Medullary phosphates/OM^c

0.22, 0.24

8.0E−05, 2.3E−05

1

109,874,806

G

Medullary mineral %, Medullary phosphates/OM^c

0.22, 0.24

9.0E−05, 2.7E−05

1

110,022,517

A

Medullary mineral %, Medullary phosphates/OM^c

0.22, 0.24

5.6E−05, 1.5E−05

1

111,607,488

G

Tibia density, Medullary mineral %, Medullary phosphates/OM^c

0.22, 0.22, 0.22

5.7E−05, 9.9E−05, 9.5E−05

1

111,673,836

A

Tibia density, TGA Medullary OM %^d

0.24, − 0.23

2.7E−05, 7.7E−05

1

111,721,984

G

TGA Medullary OM %, Medullary mineral %, Medullary phosphates %, Medullary phosphates/OM^d

− 0.23, 0.23, 0.22, 0.23

3.3E−05, 3.0E−05, 4.7E−05, 3.3E−05

1

111,798,225

A

Medullary mineral %, Medullary phosphates/OM^c

0.25, 0.25

4.5E−05, 3.9E−05

1

111,807,107

A

TGA Medullary OM %, Medullary mineral %,Medullary phosphates %, Medullary phosphates/OM^d

− 0.22, 0.24, 0.23, 0.25

8.9E−05, 1.9E−05, 4.5E−05, 1.9E−05

1

111,962,126

G

TGA Medullary OM %, Medullary mineral %^d

− 0.22, 0.21

5.7E−05, 8.8E−05

1

113,308,308

A

TGA Medullary OM %, Medullary mineral %, Medullary phosphates/OM^d

− 0.22, 0.21

5.7E−05, 8.8E−05

2

2,629,649

A

Tibia density, Cortical lipid^d

0.24, − 0.26

8.8E-05, 3.2E−05

2

2,684,066

G

Tibia density, Cortical lipid^d

0.24, − 0.26

8.8E−05, 3.2E−05

2

2,766,721

G

Tibia density, Cortical lipid^d

0.25, − 0.25

5.0E−05, 3.9E−05

2

2,862,519

C

Tibia density, Cortical lipid^d

0.25, − 0.25

5.0E−05, 3.9E−05

2

3,045,317

A

Tibia strength, Tibia density,Cortical lipid^d

0.25, 0.25, − 0.24

7.6E−05, 2.7E−05, 7.9E−05

2

3,055,823

C

Tibia strength, Tibia density,Cortical lipid^d

0.25, 0.25, − 0.24

7.6E−05, 2.7E−05, 7.9E−05

2

99,042,312

A

Cortical PO4/Amide I, TGA Cortical OM %^c,e

0.30, 0.29

2.0E−05, 5.2E−05

3

27,204,115

G

Cortical lipid, TGA Cortical OM %^c,e

0.30, 0.23

7.6E−08, 2.1E−05

3

27,351,346

C

Cortical lipid, TGA Cortical OM %^c,e

0.29, 0.21

1.9E−07, 5.0E−05

3

27,434,588

G

Cortical lipid, TGA Cortical OM %^c,e

0.31, 0.22

4.5E−08, 6.9E−05

4

83,057,186

A

Medullary PO4/Amide I, Medullary CO3/Amide I^c

0.26, 0.26

1.3E−06, 3.1E−06

4

83,154,195

G

Medullary PO4/Amide I, Medullary CO3/Amide I^c

0.21, 0.23

4.0E−05, 5.1E−06