Table 2 Number of animals and SNPs genotyped on each SNP panel and used for imputation
Illumina SNP panel | Number of SNPs | Number of animals genotyped | Number of SNPs for imputation | Number of animals in this study | Imputation accuracy |
|---|---|---|---|---|---|
AgR Custom 5k LD | 5283 | 17,631 | 3885 | 123 | 0.86 ± 0.20 |
AgR Custom 6k LD | 6015 | 8798 | 4206 | 9 | 0.85 ± 0.20 |
ISGC 15K | 15,000 | 25,831 | 11,799 | 612 | 0.92 ± 0.20 |
AgR Custom 18k LD v2A1 | 16,399 | 24,912 | 12,266 | 24 | 0.92 ± 0.20 |
AgR Custom 18k LD v2C1 | 16,227 | 4695 | 12,478 | 3 | 0.88 ± 0.20 |
ISGC Ovine HD | 606,006 | 22,802 | 568,142 | 429 | NA |