Table 2 Number of genotyped animals (mean ± SE) for all scenarios in discovery and training sets of five replicates with an effective population size (Ne) of 20 or 200
Ne | Â | Q200 H30 | Q200 H90 | Q200 H99 | Q2000 H30 | Q2000 H90 | Q2000 H99 |
|---|---|---|---|---|---|---|---|
20 | EIG50 | 75.4 ± 1.4 | 75.2 ± 1.8 | 76.6 ± 1.1 | 73.6 ± 1.7 | 75.4 ± 0.9 | 73.6 ± 0.9 |
EIG60 | 128.6 ± 2.2 | 129.2 ± 2.9 | 130.2 ± 1.8 | 126 ± 3.2 | 128 ± 1.6 | 125.6 ± 1.7 | |
EIG70 | 216.4 ± 3.2 | 219.4 ± 4.1 | 220.2 ± 3.1 | 212.4 ± 4.9 | 215.6 ± 3.5 | 211.4 ± 2.4 | |
EIG80 | 386.8 ± 4.5 | 391.4 ± 6.3 | 394.6 ± 5.3 | 381.4 ± 7.8 | 383.4 ± 5.1 | 376.4 ± 4.7 | |
EIG90 | 856 ± 9.7 | 866.6 ± 14.1 | 871 ± 10.2 | 844.2 ± 13.9 | 844.6 ± 13.3 | 832.8 ± 11.7 | |
EIG95 | 1699.6 ± 24.1 | 1719 ± 26.2 | 1728 ± 18.7 | 1684.2 ± 25.2 | 1673.6 ± 26 | 1657.8 ± 24.4 | |
EIG98 | 3917.6 ± 52.6 | 3952 ± 43.0 | 3967.4 ± 37.6 | 3896.2 ± 47.8 | 3853.8 ± 50.8 | 3838.4 ± 55.1 | |
EIG99 | 6884.4 ± 75.7 | 6932.2 ± 53.6 | 6950.2 ± 54.5 | 6859 ± 64.2 | 6780 ± 69.4 | 6773.6 ± 83.8 | |
All | 30,000 | 30,000 | 30,000 | 30,000 | 30,000 | 30,000 | |
200 | EIG50 | 512.6 ± 4.8 | 516.8 ± 3.5 | 514.0 ± 7.0 | 521.6 ± 7.9 | 513.0 ± 9.5 | 518.2 ± 5.0 |
EIG60 | 892.4 ± 8.1 | 899.6 ± 5.6 | 895.8 ± 11.3 | 907.6 ± 13.9 | 894.8 ± 15.7 | 900.4 ± 7.9 | |
EIG70 | 1502.6 ± 12.6 | 1514.6 ± 7.9 | 1507.0 ± 15.6 | 1524.0 ± 21.7 | 1509.0 ± 22.0 | 1514.0 ± 11.4 | |
EIG80 | 2591.4 ± 20.0 | 2616.8 ± 10.8 | 2597.8 ± 21.3 | 2622.6 ± 32.3 | 2609.4 ± 30.6 | 2611.8 ± 17.2 | |
EIG90 | 5130.4 ± 34.7 | 5182.2 ± 17.4 | 5146.2 ± 30.1 | 5180.8 ± 52.6 | 5175.2 ± 46.3 | 5171.6 ± 28.7 | |
EIG95 | 8632.6 ± 51.8 | 8707.8 ± 25.8 | 8652.2 ± 38.2 | 8700.0 ± 76.3 | 8705.4 ± 63.7 | 8688.6 ± 40.6 | |
EIG98 | 14,948.4 ± 76.7 | 15,047.0 ± 36.0 | 14,968.6 ± 47.1 | 15,034.8 ± 109.6 | 15,057.2 ± 89.4 | 15,016.4 ± 55.8 | |
EIG99 | 21,102.8 ± 95.6 | 21,216.8 ± 43.1 | 21,125.6 ± 54.2 | 21,204.6 ± 133.6 | 21,236.6 ± 109.4 | 21,176.8 ± 67.0 | |
All | 30,000 | 30,000 | 30,000 | 30,000 | 30,000 | 30,000 |