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Table 2 Number of genotyped individuals, SNPs, sequenced, and imputed sequenced animals in the two maternal and four terminal lines

From: Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs

Line

Number of genotyped individuals

Number of SNPs (chip)

Number of sequenced individuals

Number of imputed sequenced individuals

ML1

76,227

40,592

1366

76,230

ML2

66,608

42,746

1491

66,608

TL1

60,467

35,786

731

60,474

TL2

41,572

40,311

760

41,573

TL3

29,328

39,999

381

29,330

TL4

104,644

43,032

1856

104,661

  1. ML1: maternal line 1; ML2: maternal line 2; TL1: terminal line 1; TL2: terminal line2; TL3: terminal line 3; TL4: terminal line 4; Chip: 50k chip data