Using pre-selected variants from large-scale whole-genome sequence data for single-step genomic predictions in pigs

Table 3 Number of animals with genomic information that were retained after quality control and used in the analyses with all the SNPs panels

Line	ADFI	GROWTH	LOIN	REPROD	RET	WWT
ML1	74,148	74,153	74,152	73,919	73,891	74,058
ML2	64,654	64,655	64,659	64,599	64,653	63,456
TL1	56,423	56,424	56,422	–	–	–
TL2	38,477	38,475	38,477	–	–	–
TL3	27,671	27,671	27,671	–	–	–
TL4	102,586	102,590	102,588	–	–	–

For maternal lines ML1 and ML2; ADFI: two-trait ADFI model (ADG and ADFI); GROWTH: two-trait GROWTH model (ADG and BF); LOIN: two-trait LOIN model (ADG and LDP); REPROD: two-trait REPROD model (TNB and NSB); RET: single-trait RET model (RET); WWT: single-trait WWT model (WWT)
For terminal lines TL1, TL2, TL3, and TL4; ADFI: two-trait GROWTH model (ADG and ADFI); GROWTH: four-trait GROWTH model (ADG, BF, ADGX, and BFX); LOIN: four-trait LOIN model (ADG, LDP, ADGX, and LDPX)

ISSN: 1297-9686