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Fig. 3 | Genetics Selection Evolution

Fig. 3

From: Potential of low-density genotype imputation for cost-efficient genomic selection for resistance to Flavobacterium columnare in rainbow trout (Oncorhynchus mykiss)

Fig. 3

Accuracy of genomic prediction for resistance to F. columnare in rainbow trout, obtained with different SNP panels of different densities, before and after imputation, for (a) equally spaced SNPs and (b) randomly sampled SNPs. The horizontal red dotted line is the average accuracy for the HD-GBLUP (28K) prediction (0.68), the horizontal blue dotted line is the average accuracy for the pedigree-based BLUP prediction (0.59). a is for equally spaced SNP panels. The orange line is the accuracy value obtained with the equally spaced LD-panels (EquaLD) and the dark orange line is the accuracy obtained after imputation for those panels. b is for Random SNP panels. The light blue line is the accuracy value obtained with the Random LD-panels (RandLD) and the dark blue line is the accuracy value obtained after imputation for those panels

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Genetics Selection Evolution

ISSN: 1297-9686