Fig. 7

Prediction accuracy and bias of SNP sets based on simulation data with the GBLUP and BayesR models. a and b Results of the GBLUP model. c and d Results of the BayesR model. CC_50k commercial chip 50 K, CC_80k commercial chip 80 K, GBS genotyping-by-sequencing, LCS low-coverage sequencing, LCS_LD1 low-coverage sequencing set after removing completely linked disequilibrium SNPs, SLDP_GWAS selective linkage disequilibrium pruning based on discovery GWAS prior and parameters (P-value and r²) optimized in the training population, SLDP_QTN selective linkage disequilibrium pruning based on real QTN. The accuracy was defined as the Pearson correlation between GEBV and TBV