Table 3 Root-mean-squared error (RMSE) for the genomic-based Ne estimated for the five yearly and genealogical cohorts defined using the corresponding \({Ne}_{{F}_{i}}\) and \({Ne}_{{C}_{ij}}\) values as references
From: Approaching autozygosity in a small pedigree of Gochu Asturcelta pigs
\({Ne}_{{F}_{i}}\) | \({Ne}_{{C}_{ij}}\) | |||
|---|---|---|---|---|
BP-adjusted values | Jackknifed values | BP-adjusted values | Jackknifed values | |
Individual increase in homozygosity | ||||
\(\overline{{N }_{e}}{F}_{{ROH}_{i}}\) | 3.2 | 3.3 | 3.0 | 3.1 |
\(\overline{{N }_{e}}{F}_{{HRR}_{i}}\) | 3.4 | 3.5 | 3.2 | 3.3 |
\(\overline{{N }_{e}}{F}_{{LH}_{i}}\) | 3.7 | 3.8 | 3.4 | 3.5 |
\(\overline{{N }_{e}}{F}_{{YAN}_{i}}\) | 3.0 | 3.0 | 2.8 | 2.8 |
Increase in pairwise homozygosity | ||||
\(\overline{{N }_{e}}{F}_{{ROH}_{ijk}}\) | 2.6 | 2.5 | 2.5 | 2.5 |
\(\overline{{N }_{e}}{F}_{{HRR}_{ijk}}\) | 2.5 | 2.5 | 2.4 | 2.4 |
\(\overline{{N }_{e}}{F}_{{LH}_{ijk}}\) | 3.0 | 3.0 | 2.9 | 2.9 |
\(\overline{{N }_{e}}{F}_{{YAN}_{ijk}}\) | 3.0 | 3.0 | 2.9 | 2.9 |