Table 5 Features of QTL identified in within-population GWAS and meta-analyses (MA)
From: Sequence-based GWAS meta-analyses for beef production traits
MAa | Within-population GWAS | Fixed-effects MA | Z-score MA | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
Number of QTL total | Number of QTL per GWASb | Number of variants (CI) | Size in kb (CI) | Number of QTL | Number of variants (CI) | Size in kb (CI) | Number of QTL | Number of variants (CI) | Size in kb (CI) | |
G1 (3) | 8 | 8 | 135 (12–381) | 1650 (415–2448) | 6 | 124 (44–223) | 1736 (569–3594) | 4 | 32 (3–81) | 1691 (389–3245) |
G2 (6) | 8 | 4,4 | 216 (22–707) | 1823 (629–2903) | 8 | 50 (14–100) | 1310 (104–2828) | 8 | 56 (5–128) | 896 (34–2828) |
G3 (4) | 6 | 4,1,1 | 215 (31–564) | 2441 (1183–3922) | 8 | 114 (5–419) | 1696 (129–3426) | 7 | 75 (5–366) | 1490 (760–2143) |
M1 (7) | 15 | 1,6,2,6 | 153 (3–566) | 1438 (52–2863) | 8 | 81 (2–429) | 1070 (109–2863) | 8 | 79 (3–384) | 860 (49–2863) |
M2 (7) | 11 | 1,6,2,2 | 170 (3–566) | 1526 (109–3101) | 8 | 60 (2–411) | 882 (49–2863) | 7 | 62 (2–382) | 721 (49–2863) |
M3 (6) | 12 | 2,8,1,1 | 271 (17–793) | 1937 (495–3823) | 9 | 102 (4–421) | 1519 (274–3038) | 8 | 82 (12–376) | 1883 (693–3215) |
M4 (5) | 8 | 1,3,3,1 | 333 (32–800) | 2357 (1417–3578) | 6 | 161 (5–409) | 1701 (559–2386) | 7 | 108 (3–383) | 1328 (340–2300) |
M5 (4) | 12 | 1,10,1 | 182 (18–507) | 1871 (416–3511) | 11 | 125 (2–347) | 1611 (146–2997) | 13 | 86 (4–321) | 1724 (158–3025) |
C1 (7) | 3 | 3 | 66 (34–126) | 469 (174–823) | 4 | 35 (7–87) | 928 (78–1443) | 4 | 16 (2–52) | 338 (37–627) |
C3 (5) | 15 | 7,2,4,2 | 290 (4–902) | 1840 (59–3821) | 6 | 237 (71–850) | 2392 (721–3614) | 5 | 179 (11–637) | 1782 (721–3419) |
C4 (10) | 11 | 3,1,3,3,1 | 207 (3–570) | 1668 (680–2520) | 8 | 33 (3–161) | 1272 (24–2520) | 8 | 15 (3–34) | 1186 (69–2520) |
C5 (8) | 5 | 3,1,1 | 128 (1–403) | 1547 (0–2664) | 6 | 42 (1–90) | 1025 (0–2623) | 4 | 22 (1–45) | 902 (0–2401) |
C6 (5) | 8 | 3,2,3 | 176 (9–766) | 1869 (1–3143) | 5 | 266 (49–474) | 1975 (935–2577) | 4 | 177 (8–366) | 1780 (909–2300) |
C7 (5) | 1 | 1 | 533 | 2205 | 1 | 95 | 2857 | 1 | 80 | 2575 |
C8 (3) | 6 | 4,1,1 | 195 (17–445) | 2515 (989–3892) | 7 | 66 (3–232) | 1750 (98–3982) | 5 | 80 (2–234) | 2174 (586–3748) |
Mean | 8.6 | 218 | 1810 | 6.7 | 106 | 1582 | 6.2 | 77 | 605 | |