Table 8 Number of sQTL variants in the CI of QTL detected with the fixed-effects/z-score MA methods in different tissues and MA
From: Sequence-based GWAS meta-analyses for beef production traits
Tissue/MA | G1 | G2 | G3 | M1 | M2 | M3 | M4 | M5 | C1 | C3 | C5 | C6 | C7 | C8 | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Adipose | 2/0 | 2/2 | 2/2 | 4/2 | 1/0 | 11/6 | |||||||||
Blood | 0/1 | 1/0 | 0/4 | 1/0 | 1/0 | 3/5 | |||||||||
Embryo | 2/0 | 2/0 | |||||||||||||
Hypothalamus | 0/1 | 2/1 | 1/0 | 1/0 | 4/2 | ||||||||||
Jejunum | 2/0 | 2/0 | 4/0 | ||||||||||||
Kidney | 0/1 | 4/3 | 1/0 | 5/4 | |||||||||||
Liver | 1/0 | 2/0 | 1/0 | 1/0 | 1/0 | 6/0 | |||||||||
Lung | 2/0 | 1/1 | 1/0 | 3/1 | 1/0 | 1/0 | 9/2 | ||||||||
Lymph_node | 1/1 | 0/1 | 2/5 | 3/7 | |||||||||||
Macrophage | 1/0 | 1/3 | 1/1 | 1/0 | 2/0 | 6/4 | |||||||||
Mammary | 1/0 | 0/1 | 2/2 | 2/2 | 1/1 | 1/0 | 7/6 | ||||||||
Mammary_L | 0/2 | 0/1 | 1/3 | 1/1 | 2/7 | ||||||||||
Milk_cell | 0/1 | 0/2 | 1/0 | 1/3 | |||||||||||
Monocytes | 0/1 | 0/1 | 0/2 | ||||||||||||
Muscle | 0/1 | 0/4 | 2/3 | 1/0 | 1/0 | 4/8 | |||||||||
Ovary | 1/0 | 1/0 | |||||||||||||
Oviduct | 0/1 | 1/1 | 1/1 | 0/1 | 1/1 | 1/1 | 1/1 | 5/7 | |||||||
Pituitary | 1/0 | 1/0 | 0/1 | 1/2 | 3/3 | ||||||||||
Rumen | 1/1 | 1/1 | 2/2 | 4/4 | |||||||||||
Spleen | 1/1 | 1/1 | 1/1 | 1/2 | 1/0 | 5/5 | |||||||||
Testis | 0/1 | 0/1 | 2/2 | 2/0 | 4/4 | ||||||||||
Uterus | 1/0 | 1/0 | 2/0 | ||||||||||||
Total | 7/0 | 5/16 | 7/8 | 2/1 | 3/1 | 7/13 | 0/2 | 32/34 | 1/0 | 6/1 | 2/0 | 17/1 | 1/1 | 1/1 | 91/79 |