Fig. 4
GWA results for the score for pace. a Quantile-quantile (QQ) plot where the blue lines represent the 0.05–0.95 confidence interval. The estimated lambda value was 0.99 (se 2.84 × 10−5). b Manhattan plot from the mixed model association analysis. The red horizontal line indicates the Bonferroni significance threshold (p < 6.9 × 10−8) and the blue horizontal line indicates the suggestive genome-wide significance level (p < 1.0 × 10−5). c LD Manhattan plot on ECA4 with the top SNP as an open circle. Three SNPs reached the suggestive threshold of which two were in LD (r2 ≥ 0.8). d LD Manhattan plot on ECA9 with the top SNP as an open circle. Seven SNPs reached the suggestive threshold of which four were in LD (r2 ≥ 0.8). All positions refer to the EquCab3.0 genome assembly