Table 3 Relevant genomic regions identified for three environmental gradient (EG) classes
Environmental gradient (EG) classa | Position | Explained variance (%) | Genes |
|---|---|---|---|
EG class 1 | 18:46,374,852:46,983,072 | 0.656 | CAMK1D, CDC123, NUDT5, SEC61A2, RNU6ATAC39P, IGF2BP1, HOXB1, HOXB2, HOXB3, HOXB4, HOXB5, HOXB6, HOXB7, HOXB9, HOXB13, TTLL6, CALCOCO2, ATP5MC1, UBE2Z, SNF8, GIP, MIR196A1, MIR10A, KCNH8, PISD, PRR14L, DEPDC5, YWHAH, SLC5A1, SLC5A4, U6, CDH10, RANBP3L, MYLK2, FOXS1, DUSP15, TTLL9, PDRG1, XKR7, CCM2L, HCK, TM9SF4, PLAGL2, POFUT1, KIF3B, ASXL1, NT5C3A, FKBP9, RP9, KBTBD2, AVL9, PDE1C, MIR148A, INCENP, BEST1, RAB3IL1, FADS3, ZFAT, BCAR3, FNBP1L |
(TV: 39.535 ± 0.734 DP: 18.217 ± 1.176 Total explained variance: 5.688%) | 14:142,203,506:142,387,878 | 0.490 | |
16:11,509,437:12,226,132 | 0.447 | ||
17:67,332,252:67,844,392 | 0.414 | ||
7:127,981,346:128,414,726 | 0.380 | ||
2: 9,425,931: 9,613,380 | 0.379 | ||
12:24,782,254:25,386,252 | 0.349 | ||
4:123,450,469:123,692,404 | 0.318 | ||
13: 5,982,176: 6,582,320 | 0.317 | ||
17:35,507,357:36,063,488 | 0.293 | ||
16:21,577,390:21,860,428 | 0.284 | ||
4: 7,002,305: 7,146,525 | 0.280 | ||
10:59,377,853:59,815,833 | 0.279 | ||
14:48,306,021:48,731,419 | 0.275 | ||
18:40,475,973:40,910,375 | 0.274 | ||
17:65,356,677:65,763,082 | 0.253 | ||
EG class 2 | 10:59,377,853:59,815,833 | 0.481 | SMOC2, CAMK1D, CDC123, NUDT5, SEC61A2, RNU6ATAC39P, IGF2BP1, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, HOXB13, TTLL6, CALCOCO2, ATP5MC1, UBE2Z, SNF8, GIP, MIR196A1, MIR10A, PTPN11, RPL6, HECTD4, TRAFD1, NAA25, ERP29, TMEM116, MAPKAPK5, ALDH2, BICDL1, RAB35, GCN1, RPLP0, PXN, U6, MSI1, COX6A1, GATC, SRSF9, DYNLL1, COQ5, RNF10, POP5, MLEC, ACADS, SPPL3, HNF1A, C12orf43, OASL, C12orf76, ANKRD13A, GIT2, GLTP, SIRT4, PLA2G1B, PISD, PRR14L, DEPDC5, YWHAH, SLC5A1, SLC5A4, U4, CABP1, UNC119B, CDH10, RANBP3L, NT5C3A, FKBP9, RP9, KBTBD2, AVL9, PDE1C, MIR148A, INCENP, BEST1, RAB3IL1, FADS3, SDK1, CEBPG, PEPD, CHST8, KCTD15, GRID2, FSTL5 |
(TV: 39.687 ± 0.743DP: 22.403 ± 1.283Total explained variance: 5.476%) | 18:46,374,852:46,983,072 | 0.430 | |
14:142,174,006:142,343,216 | 0.360 | ||
16:21,577,390:21,860,428 | 0.342 | ||
12:24,812,751:25,420,666 | 0.326 | ||
17:65,356,677:65,763,082 | 0.320 | ||
8:125,810,305:126,470,348 | 0.300 | ||
17:67,332,252:67,844,392 | 0.291 | ||
2: 9,425,931: 9,613,380 | 0.282 | ||
16:11,509,437:12,226,132 | 0.276 | ||
6:43,097,060:43,829,382 | 0.269 | ||
18:40,471,432:40,882,202 | 0.266 | ||
7:127,981,346:128,414,726 | 0.264 | ||
14:48,306,021:48,731,419 | 0.259 | ||
1: 1,049,272: 1,334,349 | 0.256 | ||
3: 3,029,529: 3,257,462 | 0.252 | ||
14:39,171,016:41,112,851 | 0.252 | ||
8:49,296,088:50,537,893 | 0.250 | ||
EG class 3 | 10:59,377,853:59,815,833 | 0.402 | CAMK1D, CDC123, NUDT5, SEC61A2, RNU6ATAC39P, KATNAL1, USPL1, ALOX5AP, IGF2BP1, HOXB4, HOXB5, HOXB6, HOXB7, HOXB8, HOXB9, HOXB13, TTLL6, CALCOCO2, ATP5MC1, UBE2Z, SNF8, GIP, MIR196A1, MIR10A, PTPN11, RPL6, HECTD4, TRAFD1, NAA25, ERP29, TMEM116, MAPKAPK5, ALDH2, BICDL1, RAB35, GCN1, RPLP0, PXN, U6, MSI1, COX6A1, GATC, SRSF9, DYNLL1, COQ5, RNF10, POP5, MLEC, ACADS, SPPL3, HNF1A, C12orf43, OASL, C12orf76, ANKRD13A, GIT2, GLTP, SIRT4, PLA2G1B, U4, CABP1, UNC119B, CDH10, NADK2, RANBP3L, MIR148A, INCENP, BEST1, RAB3IL1, FADS3, SDK1, UTS2, TNFRSF9, CAMTA1, PARK7, ERRFI1, CEBPG, PEPD, CHST8, KCTD15, GRID2, FSTL5 |
(TV: 39.874 ± 0.765 DP: 25.310 ± 0.743 Total explained variance: 5.101%) | 18:46,374,852:46,983,072 | 0.395 | |
14:142,174,006:142,343,216 | 0.339 | ||
8:125,810,305:126,470,348 | 0.322 | ||
8:49,296,088:50,537,893 | 0.321 | ||
17:65,356,677:65,763,082 | 0.321 | ||
16:21,548,342:21,840,246 | 0.308 | ||
6:43,097,060:43,829,382 | 0.297 | ||
17:67,385,528:67,932,872 | 0.288 | ||
2: 9,425,931: 9,613,380 | 0.278 | ||
11:7,020,997:7,540,141 | 0.275 | ||
3: 3,029,529: 3,257,462 | 0.274 | ||
16:11,509,437:12,226,132 | 0.268 | ||
12:24,812,751:25,420,666 | 0.254 | ||
8:144,423,490:145,098,780 | 0.254 | ||
6:68,449,792:68,823,162 | 0.253 | ||
14:39,171,016:41,112,851 | 0.252 |