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Table 2 List of significant ROH islands and corresponding genes identified in each breed

From: The demographic history and adaptation of Canarian goat breeds to environmental conditions through the use of genome-wide SNP data

Breed

CHI

Start bp

End bp

N SNPs

Length Mb

Genes

MAJ

6

37,746,029

39,150,759

26

1.40

TRNASTOP-UCA, DCAF16*, NCAPG*, FAM184B*, LCORL*

7

59,583,402

60,730,551

21

1.15

CXXC5, UBE2D2, TMEM173, ECSCR, DNAJC18, SPATA24, PROB1, MZB1, SLC23A1, PAIP2, MATR3, SIL1, CTNNA1, LRRTM2, TRNAS-GGA, TRNAC-GCA, HSPA9, ETF1, EGR1, REEP2, KDM3B

PAL

6

13,342,058

15,228,960

12

1.02

LARP7, ZGRF1, ALPK1*, TIFA*, AP1AR*, C6H4orf32*, NEUROG2, PITX2, ENPEP

6

16,459,877

18,091,733

17

3.09

COL25A1, ETNPPL, OSTC, LEF1, HADH, SGMS2, PAPSS1*

9

71,102,228

71,943,009

14

0.84

ADGB, STXBP5, SASH1

10

66,619,056

67,062,439

10

0.46

VPS18, RHOV, SPINT1, PPP1R14D, ZFYVE19, DNAJC17, C10H15orf62, GCHFR, RMDN3, RAD51, KNL1, TRNAS-GCU, RPUSD2, C10H15orf57, CHST14, BAHD1, IVD, KNSTRN

12

57,770,691

58,452,269

13

0.68

FRY, ZAR1L, BRCA2, N4BP2L1, N4BP2L2, PDS5B

TIN

1

27,667,084

28,183,186

12

0.51

GBE1

10

66,062,165

67,331,443

24

1.29

TYRO3, RPAP1, LTK, ITPKA, RTF1, TRNAW-CCA, NDUFAF1, NUSAP1, OIP5, CHP1, EXD1, INO80, CHAC1, DLL4, VPS18, RHOV, SPINT1, PPP1R14D, ZFYVE19, DNAJC17, C10H15orf62, GCHFR, RMDN3, RAD51, KNL1, TRNAS-GCU, RPUSD2, C10H15orf57, CHST14, BAHD1, IVD, KNSTRN, DISP2, C10H15orf52, INAFM2, PLCB2, ANKRD63, PAK6, BUB1B, BMF

11

95,578,638

96,126,324

10

0.52

PPP6C, RABEPK, HSPA5, GAPVD1, MAPKAP1, PBX3

TIS

7

59,583,402

60,848,376

21

1.27

CXXC5, UBE2D2, TMEM173, ECSCR, DNAJC18, SPATA24, PROB1, MZB1, SLC23A1, PAIP2, MATR3, SIL1, CTNNA1, LRRTM2, TRNAS-GGA, TRNAC-GCA, HSPA9, ETF1, EGR1, REEP2, KDM3B, FAM53C, CDC25C, GFRA3

10

66,062,165

67,245,671

19

1.21

TYRO3, RPAP1, LTK, ITPKA, RTF1, TRNAW-CCA, NDUFAF1, NUSAP1, OIP5, CHP1, EXD1, INO80, CHAC1, DLL4, VPS18, RHOV, SPINT1, PPP1R14D, ZFYVE19, DNAJC17, C10H15orf62, GCHFR, RMDN3, RAD51, KNL1, TRNAS-GCU, RPUSD2, C10H15orf57, CHST14, BAHD1, IVD, KNSTRN, DISP2, C10H15orf52, INAFM2, PLCB2, ANKRD63, PAK6, BUB1B

12

48,240,863

49,314,534

14

1.06

TRNAS-GGA

  1. Chromosome (CHI), start and end position, number of SNPs (N), length of the ROH islands and relative genes are reported. All the genes detected in each significant ROH island are listed, with those that overlapped between goat breeds indicated in italics and those that overlapped between approaches (ROH and FST islands) indicated using the * symbol
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Genetics Selection Evolution

ISSN: 1297-9686