Fig. 2
From: A cautionary tale of low-pass sequencing and imputation with respect to haplotype accuracy
Post-imputation genotype r2, dosage r2, and non-reference allele discordance rate (%) following imputation at each depth of coverage, based on different reference panels, relative to high coverage. a MAF-binned r2 values comparing imputed versus validation genotypes. b Box plots of imputed dosage r2 values for imputed genotypes from each sequencing depth. c Box plots of non-reference discordance rate (%) for imputed genotypes from each sequencing depth. In each case, the validation genotypes are the 43.5X imputed genotypes