Fig. 4
From: A cautionary tale of low-pass sequencing and imputation with respect to haplotype accuracy
UpSet plot showing intersection of significant GEMMA p values between the different sequencing depths. Results are presented from each depth of coverage, imputed using each reference panel. The main bar plot indicates the count of intersecting significant variants (p < 1 × 10–6) between the datasets highlighted with points in the matrix beneath. Each row in the matrix corresponds to a specific dataset, and the label indicates the reference panel used (full, panel 1, or panel 2), and the sequencing depth of the data (0.9X, 3.8X, 9.6X, 17.4X, or 43.5X). The bar plot to the left indicates the number of significant variants identified for the corresponding dataset and is coloured according to the reference panel used