Fig. 8
From: A cautionary tale of low-pass sequencing and imputation with respect to haplotype accuracy
Impact of genotype accuracy on haplotype inference. a From the genomic region 18:41493468–41495040 presented in Fig. 7 there are seven possible haplotypes for this dog (LAB_11) across the different depths. b The allele frequencies at these variants from the different reference panels used for imputation are highly consistent. c The BAM file sequencing depths for all dogs in this region are consistently and significantly lower than the chromosome average for each of the different depths of coverage analysed (paired Wilcox test p < 0.05)