Table 2 Number of ancestral allele calls (percentage) mapping to the major and minor alleles on the autosomes and X chromosome over the 1000 Bull Genomes, Bos taurus and Bos indicus
Group (N) | Ancestral allele call | Number of autosomal SNPs | Number of X chromosomal SNPs | Number of high confidence* autosomal SNPs | Number of high confidence* X chromosomal SNPs |
|---|---|---|---|---|---|
Cattle (6191) | Major | 59,296,006 (87.50) | 2,090,158 (88.73) | 55,007,099 (88.74) | 1,765,733 (90.30) |
Minor | 8,469,172 (12.50) | 239,091 (10.26) | 6,979,348 (11.26) | 189,518 (9.69) | |
Total | 67,766,018 | 232,9275 | 61,987,061 | 1,955,267 | |
Bos taurus (5204) | Major | 59,122,728 (87.24) | 2,085,396 (89.53) | 54,842,130 (88.48) | 1,761,321 (90.08) |
Minor | 8,642,431 (12.75) | 243,843 (10.47) | 7,144,313 (11.52) | 193,930 (9.92) | |
Bos indicus (606) | Major | 60,338,000 (89.04) | 2,128,601 (91.39) | 56,039,349 (90.41) | 1,814,511 (92.80) |
Minor | 7,412,619 (10.94) | 200,194 (8.60) | 5,934,888 (9.57) | 140,448 (7.18) |