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Table 6 PCA pseudo-R\(^{2}\) values

From: A common regulatory haplotype doubles lactoferrin concentration in milk

 

\(\beta\) allele affects

\(-\log _{10}(p)\)

Phenotype

Me1-196

ATAC-93

Me1-196

ATAC-93

LogPeak

0.841

0.874

0.948

0.930

LogMid

0.809

0.854

0.912

0.907

LogLate

0.831

0.870

0.924

0.921

Agg

0.772

0.819

0.880

0.882

  1. Values show the percentage of variance explained by the first principal component, for datasets comprising the Log-Peak pQTL, LTF eQTL, the Me1-196 hQTL, and the ATAC-93 caQTL, and were calculated between the allele effects (\(\beta\)) and between the \(\mathsf {-\log _{10}}\) p-values, across markers within 50 kb of the LTF gene, i.e., between positions 52896110 and 53036647 on BTA22
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Genetics Selection Evolution

ISSN: 1297-9686