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Fig. 1 | Genetics Selection Evolution

Fig. 1

From: Genetic introgression from commercial European pigs to the indigenous Chinese Lijiang breed and associated changes in phenotypes

Fig. 1

Discriminant analysis of principal components (DAPC), phylogenetic structure, and population admixture of LJP and other breeds. a DAPC of pig breeds using whole-genome SNPs. DAPC1, DAPC2, and DAPC3 explained 55.43%, 19.98%, and 9.00% of the genetic variance, respectively. The populations were clustered together according to their location, including Eastern Chinese domestic pigs (ECDP), Northern Chinese domestic pigs (NCDP), Southwestern Chinese domestic pigs (SWCDP), Tibetan pigs (including Tibetan pigs located in Diqing and Daocheng, i.e. TIBP-E; and other Tibetan pigs, i.e. TIBP-O), Lijiang Pig (LJP), Southern Chinese domestic pigs (SCDP), wild boar (WB), commercial European pigs (EP), and European wild boar (WBE). b Neighbour-joining (NJ) tree based on the IBS distance matrix of all pigs. The branch colors represent unique breed codes as described in Additional file 1: Table S1. c Admixture results for K = 2 to 10

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Genetics Selection Evolution

ISSN: 1297-9686