Open Access

Detection and modelling of time-dependent QTL in animal populations

  • Mogens S. Lund1Email author,
  • Peter Sorensen1,
  • Per Madsen1 and
  • Florence Jaffrézic2
Genetics Selection Evolution200840:177

https://doi.org/10.1186/1297-9686-40-2-177

Received: 2 January 2007

Accepted: 3 September 2007

Published: 15 March 2008

Abstract

A longitudinal approach is proposed to map QTL affecting function-valued traits and to estimate their effect over time. The method is based on fitting mixed random regression models. The QTL allelic effects are modelled with random coefficient parametric curves and using a gametic relationship matrix. A simulation study was conducted in order to assess the ability of the approach to fit different patterns of QTL over time. It was found that this longitudinal approach was able to adequately fit the simulated variance functions and considerably improved the power of detection of time-varying QTL effects compared to the traditional univariate model. This was confirmed by an analysis of protein yield data in dairy cattle, where the model was able to detect QTL with high effect either at the beginning or the end of the lactation, that were not detected with a simple 305 day model.

Keywords

QTL detection longitudinal data random regression models

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Authors’ Affiliations

(1)
Faculty of Agricultural Sciences, Department of Genetics and Biotechnology, University of Aarhus, Research Center Foulum
(2)
UR337 Station de génétique quantitative et appliquée, INRA

Copyright

© INRA, EDP Sciences 2008

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