From: Accuracy of genomic breeding values in multi-breed dairy cattle populations
 |  |  | Trait | ||||
---|---|---|---|---|---|---|---|
Reference Set | Validation set | Method | Protein | Fat | Milk | Prot% | Fat% |
Holstein only | Holstein | GBLUP | 0.49 | 0.44 | 0.59 | 0.61 | 0.62 |
 |  | BAYESA | 0.47 | 0.44 | 0.59 | 0.59 | 0.71 |
 |  | BAYES_SSVS | 0.47 | 0.44 | 0.59 | 0.58 | 0.70 |
 | Jersey | GBLUP | -0.06 | -0.02 | -0.02 | -0.06 | 0.23 |
 |  | BAYESA | 0.24 | 0.35 | 0.37 | 0.33 | 0.63 |
 |  | BAYES_SSVS | 0.27 | 0.31 | 0.23 | 0.29 | 0.42 |
Jersey only | Holstein | GBLUP | 0.03 | -0.01 | -0.01 | 0.03 | 0.11 |
 |  | BAYESA | 0.01 | 0.02 | -0.02 | 0.05 | 0.17 |
 |  | BAYES_SSVS | 0.03 | 0.04 | 0.01 | 0.02 | 0.11 |
 | Jersey | GBLUP | 0.53 | 0.41 | 0.63 | 0.62 | 0.72 |
 |  | BAYESA | 0.43 | 0.37 | 0.59 | 0.51 | 0.67 |
 |  | BAYES_SSVS | 0.43 | 0.37 | 0.59 | 0.51 | 0.65 |
Holstein and Jersey | Holstein | GBLUP | 0.49 | 0.45 | 0.59 | 0.61 | 0.62 |
 |  | BAYESA | 0.47 | 0.44 | 0.55 | 0.54 | 0.69 |
 |  | BAYES_SSVS | 0.46 | 0.45 | 0.55 | 0.54 | 0.70 |
 | Jersey | GBLUP | 0.53 | 0.42 | 0.56 | 0.60 | 0.73 |
 |  | BAYESA | 0.47 | 0.51 | 0.58 | 0.67 | 0.82 |
 |  | BAYES_SSVS | 0.47 | 0.51 | 0.58 | 0.67 | 0.82 |