Skip to main content

Advertisement

Table 3 Accuracies of GEBV using either GBLUP or SNP effects from BAYESA or BAYES_SSVS to predict GEBV

From: Accuracy of genomic breeding values in multi-breed dairy cattle populations

    Trait
Reference Set Validation set Method Protein Fat Milk Prot% Fat%
Holstein only Holstein GBLUP 0.49 0.44 0.59 0.61 0.62
   BAYESA 0.47 0.44 0.59 0.59 0.71
   BAYES_SSVS 0.47 0.44 0.59 0.58 0.70
  Jersey GBLUP -0.06 -0.02 -0.02 -0.06 0.23
   BAYESA 0.24 0.35 0.37 0.33 0.63
   BAYES_SSVS 0.27 0.31 0.23 0.29 0.42
Jersey only Holstein GBLUP 0.03 -0.01 -0.01 0.03 0.11
   BAYESA 0.01 0.02 -0.02 0.05 0.17
   BAYES_SSVS 0.03 0.04 0.01 0.02 0.11
  Jersey GBLUP 0.53 0.41 0.63 0.62 0.72
   BAYESA 0.43 0.37 0.59 0.51 0.67
   BAYES_SSVS 0.43 0.37 0.59 0.51 0.65
Holstein and Jersey Holstein GBLUP 0.49 0.45 0.59 0.61 0.62
   BAYESA 0.47 0.44 0.55 0.54 0.69
   BAYES_SSVS 0.46 0.45 0.55 0.54 0.70
  Jersey GBLUP 0.53 0.42 0.56 0.60 0.73
   BAYESA 0.47 0.51 0.58 0.67 0.82
   BAYES_SSVS 0.47 0.51 0.58 0.67 0.82