Skip to main content

Table 4 Selection response after several generations of genomic selection

From: A note on mate allocation for dominance handling in genomic selection

  h2= 0.20 d2= 0.05 h2= 0.20 d2= 0.10
  GSD GSD + MA GSD GSD + MA
Gen. Markers QTL True Markers QTL True Markers QTL True Markers QTL True
1 0.471 (0.054) 0.489 (0.119) 0.639 (0.030) 0.527 (0.048) 0.631 (0.146) 0.796 (0.035) 0.470 (0.045) 0.499 (0.079) 0.637 (0.031) 0.575 (0.060) 0.724 (0.118) 0.876 (0.040
2 0.280 (0.060) 0.363 (0.093) 0.492 (0.055) 0.265 (0.060) 0.348 (0.092) 0.493 (0.052) 0.275 (0.068) 0.343 (0.096) 0.489 (0.051) 0.253 (0.082) 0.317 (0.860) 0.467 (0.054
3 0.206 (0.061) 0.307 (0.085) 0.479 (0.058) 0.242 (0.054) 0.316 (0.096) 0.493 (0.058) 0.224 (0.082) 0.272 (0.105) 0.452 (0.061) 0.238 (0.060) 0.305 (0.097) 0.468 (0.059
4 0.180 (0.062) 0.236 (0.129) 0.445 (0.073) 0.180 (0.051) 0.230 (0.108) 0.439 (0.068) 0.181 (0.070) 0.199 (0.146) 0.412 (0.074) 0.166 (0.066) 0.204 (0.115) 0.405 (0.070
5 0.177 (0.046) 0.189 (0.137) 0.425 (0.085) 0.153 (0.059) 0.200 (0.097) 0.415 (0.079) 0.152 (0.057) 0.127 (0.135) 0.374 (0.088) 0.158 (0.059) 0.180 (0.087) 0.368 (0.081
  h 2 = 0.40 d 2 = 0.05 h 2 = 0.40 d 2 = 0.10
  GSD GSD + MA GSD GSD + MA
Gen. Markers QTL True Markers QTL True Markers QTL True Markers QTL True
1 0.771 (0.062) 0.840 (0.063) 0.897 (0.048) 0.815 (0.058) 1.005 (0.056) 1.048 (0.046) 0.754 (0.052) 0.840 (0.065) 0.901 (0053) 0.875 (0.066) 1.076 (0.065) 1.117 (0.060)
2 0.520 (0.063) 0.643 (0.089) 0.732 (0.069) 0.517 (0.070) 0.644 (0.091) 0.722 (0.084) 0.513 (0.082) 0.616 (0.105) 0.686 (0.078) 0.499 (0.089) 0.603 (0.079) 0.681 (0.091)
3 0.434 (0.078) 0.580 (0.123) 0.676 (0.084) 0.422 (0.070) 0.587 (0.125) 0.709 (0.093) 0.420 (0.071) 0.546 (0.107) 0.650 (0.100) 0.430 (0.079) 0.600 (0.114) 0.683 (0.096)
4 0.361 (0.089) 0.512 (0.119) 0.643 (0.120) 0.342 (0.092) 0.499 (0.136) 0.651 (0.127) 0.324 (0.087) 0.486 (0.144) 0.609 (0.109) 0.334 (0.087) 0.470 (0.134) 0.589 (0.110)
5 0.301 (0.103) 0.430 (0.136) 0.607 (0.143) 0.293 (0.089) 0.426 (0.126) 0.611 (0.142) 0.291 (0.103) 0.473 (0.143) 0.551 (0.129) 0.282 (0.089) 0.451 (0.128) 0.549 (0.129)
  1. GSD (genomic selection with dominance) and GSD + MA (genomic selection with dominance and mate allocation) and using SNP markers (markers), QTL genotypes as markers (QTL), and known QTL effects (True)