From: Accuracy of direct genomic values in Holstein bulls and cows using subsets of SNP markers
Test set | SNP selection | Number of SNP | |||||
---|---|---|---|---|---|---|---|
 |  | 5,000 | 3,000 | 1,000 | 500 | 300 | 100 |
Bulls | Â | Trait-specific assay | |||||
 |  | 89 | 85 | 84 | 78 | 72 | 59 |
 |  | Common assay of evenly spaced SNP | |||||
 | ASI | 88 | 86 | 68 | 67 | 65 | 32 |
 | APR | 92 | 86 | 68 | 67 | 65 | 32 |
 | MAF | 86 | 80 | 61 | 62 | 58 | 40 |
Cows | Â | Trait-specific assay | |||||
 |  | 98 | 96 | 88 | 80 | 80 | 72 |
 |  | Common assay of evenly spaced SNP | |||||
 | ASI | 94 | 92 | 85 | 75 | 69 | 47 |
 | APR | 92 | 90 | 79 | 77 | 69 | 52 |
 | MAF | 94 | 93 | 78 | 79 | 57 | 42 |