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Table 3 Computation time1 required to phase 2000 2SNP for the simulated Ne1000 data when using or ignoring pedigree information

From: A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes

  Number of individuals With pedigree Without pedigree
Pedigree 1 2000   30 min 34 s
Pedigree 2 NPG3 1000 4 min 3 s 3 min 3 s
Pedigree 2 PG4 2000 39 min 21 s 26 min 58 s
Pedigree 3 NPG3 1000 7 min 56 s 5 min 20 s
Pedigree 3 PG4 1600 18 min 23 s 17 min 11 s
Pedigree 4 NPG3 1000 9 min30 s 50 min 27 s
Pedigree 4 PG4 1510 17 min 4 s 10 min 48 s
Pedigree 5 3000 106 min 37 s 179 min 52 s
Pedigree 6 sires 2578 78 min 22 s 39 min 43 s
Pedigree 6 last 2000 2000 48 min 24 s 321 min 27 s
Pedigree 7 sires 1777 23 min 47 s 22 min 18 s
Pedigree 7 last 2000 2000 54 min 1 s 74 min 15 s
Pedigree 8 879 4 min 14 s 2 min 41 s
  1. 1A 64 bit desktop with an Intel i7 3.07 GHz quad core processor running Linux was used to measure computation time; computation time measured in minutes and seconds includes time required to parse and summarise the data and write out the results; 2using a core length of 100 SNP and a CplusT length of 300 SNP for each dataset; 3NPG indicates that this dataset did not have parents genotyped; 4PG indicates that this dataset had parents genotyped