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Table 3 The average accuracy of breeding value estimates (±SE) in the test set obtained from three methods of analysis of reference population 3 with 60,000 SNPs and different genetic models

From: Different models of genetic variation and their effect on genomic evaluation

Model

No. QTL

Bayes B

gBLUP

BLUP

QM

100

0.77 (0.021)

0.33 (0.011)

0.00 (0.000)

 

1000

0.47 (0.014)

0.34 (0.017)

0.00 (0.000)

 

10,000

0.32 (0.012)

0.31 (0.010)

0.00 (0.000)

 

IM

0.32 (0.015)

0.3 (0.017)

0.00 (0.000)

RM

100

0.63 (0.033)

0.21 (0.021)

0.00 (0.000)

 

1000

0.25 (0.049)

0.19 (0.023)

0.00 (0.000)

Polygenic

 

0.00 (0.012)

-0.01 (0.010)

0.00 (0.000)