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Table 2 Significance of differences in accuracies between all SNP models

From: Accuracy of multi-trait genomic selection using different methods

Model Scenario rg1 Trait G vs. BCπ0 G vs. BSSVS BCπ0 vs. BSSVS
ST 1   1 *** ***  
  1 0.25 2    
  1 0.54 2    
  1 0.75 2    
  2   1    
  2 0.25 2    
  2 0.54 2    
  2 0.75 2    
MT 1 0.25 1 *** *** ***
  1 0.54 1 *** *** ***
  1 0.75 1 *** *** ***
  1 0.25 2 *** *** *
  1 0.54 2 *** *** *
  1 0.75 2 *** *** *
  2 0.25 1 *** ***  
  2 0.54 1 *** *** **
  2 0.75 1 *** *** **
  2 0.25 2 *** ***  
  2 0.54 2 *** ***  
  2 0.75 2 *** ***  
  1. Comparisons are between ST and MT models for animals without any phenotypes (generation 3) between pairwise SNP-based models across scenarios, genetic correlations (rg), and traits
  2. 1Phenotypes for trait 1 were the same across genetic correlations, and therefore analyzed only once with each ST model; *** P-value < 0.001, ** P-value < 0.01, * P-value < 0.05