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Table 1 Casein genes SNP' position and frequencies in Norwegian dairy goats

From: Casein SNP in Norwegian goats: additive and dominance effects on milk composition and quality

SNPA Gene Location AllelesB Frequency of rare alleleC
1 CSN1S1 Promoter A(G) 0.050
2 CSN1S1 Promoter C(T) 0.049
4 CSN1S1 Promoter G(A) 0.130
5 CSN1S1 Promoter G(A) 0.145
6 CSN1S1 Promoter G(A) 0.147
7 CSN1S1 Promoter C(T) 0.146
8 CSN1S1 Promoter G(A) 0.068
9 CSN1S1 Exon 4 T(C) 0.150
10 CSN1S1 Exon 5 C(G) 0.160
11 CSN1S1 Exon 9 C(D) 0.037
12 CSN1S1 Intron 8 A(G) 0.148
13 CSN1S1 Exon 10 C(G) 0.148
14 CSN1S1 Exon 12 Allele 1 (D) 0.737
    Allele 3 (G) 0.112
    Allele 6 (A) 0.151
15 CSN1S1 Exon 17 C(T) 0.116
16 CSN2 Exon 7 T(C) 0.062
17 CSN2 Promoter A(G) 0.061
18 CSN2 Promoter G(A) 0.024
19 CSN2 Promoter A(G) 0.060
20 CSN2 Promoter (A)T 0.060
21 CSN2 Promoter C(T) 0.064
22 CSN1S2 Exon 3 G(A) 0.078
24 CSN1S2 Exon 16 C(G) 0.050
25 CSN1S2 Exon 16 C(T) 0.318
26 CSN1S2 Exon 16 A(T) 0.315
27 CSN3 Promoter G(A) 0.421
28 CSN3 Promoter G(A) 0.493
29 CSN3 Promoter (A)G 0.002
30 CSN3 Promoter T(A) 0.494
31 CSN3 Promoter T(A) 0.466
32 CSN3 Promoter G(C) 0.494
33 CSN3 Promoter T(G) 0.465
34 CSN3 Promoter T(G) 0.480
35 CSN3 Promoter A(G) 0.092
36 CSN3 Promoter T(C) 0.317
37 CSN3 Promoter G(T) 0.328
38 CSN3 Promoter A(G) 0.180
39 CSN3 Promoter G(A) 0.092
40 CSN3 Exon 4 C(T) 0.098
  1. A Numbering of SNP is according to Hayes et al., 2006 [20]
  2. B The allele in parentheses refers to the minor allele for the SNP. 'D' in SNP11 and SNP14 refer to a deletion.
  3. C For SNP14 frequencies are reported for all the three possible alleles