Table 1 Casein genes SNP' position and frequencies in Norwegian dairy goats
From: Casein SNP in Norwegian goats: additive and dominance effects on milk composition and quality
SNPA | Gene | Location | AllelesB | Frequency of rare alleleC |
|---|---|---|---|---|
1 | CSN1S1 | Promoter | A(G) | 0.050 |
2 | CSN1S1 | Promoter | C(T) | 0.049 |
4 | CSN1S1 | Promoter | G(A) | 0.130 |
5 | CSN1S1 | Promoter | G(A) | 0.145 |
6 | CSN1S1 | Promoter | G(A) | 0.147 |
7 | CSN1S1 | Promoter | C(T) | 0.146 |
8 | CSN1S1 | Promoter | G(A) | 0.068 |
9 | CSN1S1 | Exon 4 | T(C) | 0.150 |
10 | CSN1S1 | Exon 5 | C(G) | 0.160 |
11 | CSN1S1 | Exon 9 | C(D) | 0.037 |
12 | CSN1S1 | Intron 8 | A(G) | 0.148 |
13 | CSN1S1 | Exon 10 | C(G) | 0.148 |
14 | CSN1S1 | Exon 12 | Allele 1 (D) | 0.737 |
Allele 3 (G) | 0.112 | |||
Allele 6 (A) | 0.151 | |||
15 | CSN1S1 | Exon 17 | C(T) | 0.116 |
16 | CSN2 | Exon 7 | T(C) | 0.062 |
17 | CSN2 | Promoter | A(G) | 0.061 |
18 | CSN2 | Promoter | G(A) | 0.024 |
19 | CSN2 | Promoter | A(G) | 0.060 |
20 | CSN2 | Promoter | (A)T | 0.060 |
21 | CSN2 | Promoter | C(T) | 0.064 |
22 | CSN1S2 | Exon 3 | G(A) | 0.078 |
24 | CSN1S2 | Exon 16 | C(G) | 0.050 |
25 | CSN1S2 | Exon 16 | C(T) | 0.318 |
26 | CSN1S2 | Exon 16 | A(T) | 0.315 |
27 | CSN3 | Promoter | G(A) | 0.421 |
28 | CSN3 | Promoter | G(A) | 0.493 |
29 | CSN3 | Promoter | (A)G | 0.002 |
30 | CSN3 | Promoter | T(A) | 0.494 |
31 | CSN3 | Promoter | T(A) | 0.466 |
32 | CSN3 | Promoter | G(C) | 0.494 |
33 | CSN3 | Promoter | T(G) | 0.465 |
34 | CSN3 | Promoter | T(G) | 0.480 |
35 | CSN3 | Promoter | A(G) | 0.092 |
36 | CSN3 | Promoter | T(C) | 0.317 |
37 | CSN3 | Promoter | G(T) | 0.328 |
38 | CSN3 | Promoter | A(G) | 0.180 |
39 | CSN3 | Promoter | G(A) | 0.092 |
40 | CSN3 | Exon 4 | C(T) | 0.098 |