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Table 5 Counts of numbers of deleted and non-dele ted animals

From: Identification of Mendelian inconsistencies between SNP and pedigree information of sibs

Test   Permuted pedigree1 Deleted Type I Type II
PAR-OFF + SIB PAR-OFF 19.7 13.8 3.9 5.8
   206.8 142.7 38.3 64.1
   509.9 336.0 80.9 173.9
  SIBCOUNT 19.7 4.5 0.3 1.3
   206.8 57.0 10.1 7.3
   509.9 149.9 41.0 24.0
  SIBREL 19.7 4.0 0.4 1.8
   206.8 50.2 9.7 13.9
   509.9 136.2 36.5 37.7
  PAR-OFF + 19.7 18.32 4.23 1.34
  SIBCOUNT 206.8 199.7 48.5 7.3
   509.9 485.9 121.9 24.0
  PAR-OFF + 19.7 17.9 4.2 1.8
  SIBREL 206.8 192.9 48.0 13.9
   509.9 472.2 117.5 37.7
SIB ONLY SIBCOUNT 19.7 18.1 0.7 1.6
   206.8 195.7 46.0 11.1
   509.9 474.4 140.0 35.6
  SIBREL 19.7 17.0 1.0 2.8
   206.8 183.2 39.9 23.6
   509.9 446.0 119.0 64.0
  1. Counts of correctly deleted animals (Deleted), and incorrectly deleted (Type I) and incorrectly non-deleted (Type II) animals
  2. 1Numbers of animals with permuted data, when pedigree data was permuted against genotype data for either 1%, 10%, or 25% of the animals. For SIBCOUNT and SIBREL after performing PAR-OFF, these numbers decrease to 5.9, 64.1, and 173.9, respectively (i.e. by subtracting the number of animals correctly deleted by PAR-OFF);
  3. 2sum of the number of animals deleted by PAR-OFF and SIBCOUNT (or SIBREL);
  4. 3sum of the type I errors of PAR-OFF and SIBCOUNT (or SIBREL);
  5. 4this figure is equal to the type II errors of SIBCOUNT (or SIBREL)