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Table 1 P values obtained in standard association test and marker-assisted association test and additive effects of the seven SNP

From: Fine mapping of a QTL for ear size on porcine chromosome 5 and identification of high mobility group AT-hook 2 (HMGA2) as a positional candidate gene

Gene

Polymorphism

P -sa

P -ma

Allele

Additive effect ± s.e. (cm2)

HMGA2 (JF748727)

g.2836 A > G

9.19E-46

1.92E-05

A

-32.84 ± 5.46

 

g.215 C > T

5.04E-26

1.23E-03

T

27.40 ± 5.37

 

g.1799 G > A

1.60E-19

0.04

G

22.54 ± 4.76

SOX5 (JF748729)

g.9084 T > C

3.51E-07

0.03

C

32.56 ± 7.25

 

g.9908 T > C

4.54E-25

0.02

C

15.72 ± 5.00

 

g.12328 T > G

8.12E-07

0.11

G

-15.28 ± 5.02

PTHLH (JF748728)

g.9440 T > C

5.12E-07

0.03

C

11.74 ± 5.15

  1. P-sa: P values in standard association analysis; P-ma: P values in marker-assisted association analysis; s.e.: standard error; the negative values indicate decrease in ear size
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Genetics Selection Evolution

ISSN: 1297-9686