Table 2 Associations of HMGA2 and SOX5 haplotypes with ear size in the F₂ resource population

HMGA2

A/C/G

0.002

-41.43 ± 28.64

1

A/C/A

0.012

-5.09 ± 9.66

1

A/T/G

0.484

-20.96 ± 1.70

4.34E-31

A/T/A

0.004

-36.21 ± 15.33

0.15

G/C/G

0.001

8.73 ± 28.68

1

G/C/A

0.255

22.71 ± 2.22

3.87E-22

G/T/G

0.213

16.66 ± 2.71

9.71E-09

G/T/A

0.029

3.72 ± 6.66

1

phenotypic variance explained by all haplotypes

19.47%

1.31E-31

SOX5

T/T/T

0.170

-7.99 ± 2.69

0.03

T/C/T

0.234

11.09 ± 2.33

1.83E-05

T/T/G

0.359

-17.75 ± 1.96

6.45E-18

T/C/G

0.101

11.85 ± 2.97

5.66E-04

C/T/T

0.002

45.88 ± 19.90

0.17

C/C/T

0.114

15.19 ± 2.96

2.71E-06

C/T/G

0.008

3.87 ± 10.37

1

C/C/G

0.012

17.88 ± 8.99

0.38

phenotypic variance explained by all haplotypes

12.82%

2.48E-22